coralME
1. Getting started
2. Description of Inputs
3. Adding annotation from a BioCyc Database
4. Architecture of coralME
5. Reconstructing with BioCyc information and curated files
6. Reconstructing a ME-model from the OSM
7. Loading and inspecting ME-models
8. Inspecting predicted fluxes
9. Memory- and time-efficient solving of ME-models
10. Frequently Asked Questions
coralME
Index
Index
A
|
C
|
E
|
F
|
G
|
L
|
M
|
O
|
P
|
R
|
S
|
T
A
AminoacidtRNASynthetase (class in coralme.builder.curation)
C
CleavedMethionine (class in coralme.builder.curation)
E
EnzymeReactionAssociation (class in coralme.builder.curation)
ExcisionMachinery (class in coralme.builder.curation)
F
FoldingDict (class in coralme.builder.curation)
G
GenericDict (class in coralme.builder.curation)
L
LipidModifications (class in coralme.builder.curation)
LipoproteinPrecursors (class in coralme.builder.curation)
M
ManualComplexes (class in coralme.builder.curation)
MEMetabolites (class in coralme.builder.curation)
O
org_data (coralme.builder.curation.ManualComplexes property)
OrphanSpontReactions (class in coralme.builder.curation)
P
PeptideReleaseFactors (class in coralme.builder.curation)
ProteinLocation (class in coralme.builder.curation)
R
ReactionCorrections (class in coralme.builder.curation)
ReactionMatrix (class in coralme.builder.curation)
RhoIndependent (class in coralme.builder.curation)
RibosomeStoich (class in coralme.builder.curation)
RibosomeSubreactions (class in coralme.builder.curation)
RNADegradosome (class in coralme.builder.curation)
RNAModificationMachinery (class in coralme.builder.curation)
RNAModificationTargets (class in coralme.builder.curation)
S
Sigmas (class in coralme.builder.curation)
SpecialModifications (class in coralme.builder.curation)
SpecialtRNASubreactions (class in coralme.builder.curation)
SubreactionMatrix (class in coralme.builder.curation)
SubsystemClassification (class in coralme.builder.curation)
T
TerminationSubreactions (class in coralme.builder.curation)
TranscriptionSubreactions (class in coralme.builder.curation)
TranslocationMultipliers (class in coralme.builder.curation)
TranslocationPathways (class in coralme.builder.curation)